Statistical functions of EZR For discrete variables

Frequency distributions/cr Confidence interval for a proportion
One sample proportion test
Confidence interval for a difference between two proportions
Confidence interval for a ratio of two proportions
Compare two proportions (Fisher's exact test and Chi-square test)
Compare proportions of two paired samples (McNemar test)
Compare proportions of more than two paired samples (Cochran Q test)
Cochran-Armitage test for trend in proportions
Logistic regression

For continuous variables

Numerical summaries
Smirnov-Grubbs test for outliers
Kolmogorov-Smimov test for normal distribution
Confidence interval for a mean
Single-sample t-test
Two-variances F-test
Two-sample t-test
Paired t-test
Bartlett's test
One-way ANOVA
Repeated-measures ANOVA
Multi-way ANOVA
Test for Pearson's correlation
Linear regression

For nonparametric tests for continuous variables

Mann-Whitney U test
Wilcoxon's signed rank test
Kruskal-Wallis test
Friedman test
Jonckheere-Terpstra test
Spearman's rank correlation test

For survival analysis

Kaplan-Meier survival curve and logrank test
Logrank trend test
Cox proportional hazard regression
Cox proportional hazard regression with time-dependent covariate
Cumulative incidence of competing events and Gray test
Fine-Gray proportional hazard regression for competing events

For diagnostic test analysis

Accuracy of qualitative test
Kappa statistics for agreement of two tests
Compute positive and negative predictive values
ROC curve analysis for quantitative test
Compare two ROC curves
Cronbach's alpha coefficient for reliability

For matched-pair analysis

Extract matched controls (This function relys on optmatch package and is limietd to academic use.)
Mantel-Haenzel test for matched proportions
Conditional logistic regression for matched-pair analysis
Stratified Cox proportional hazard regression for matched-pair analysis

For meta-analysis and meta-regression test

Meta-analysis and meta-regression test for proportions
Meta-analysis and meta-regression test for means
Meta-analysis and meta-regression test for hazard ratios

For smaple size and power calculation

Calculate sample size from control and desired response rates
Calculate sample size from proportion and confidence interval
Calculate sample size or power for comparison with specified proportion
Calculate sample size or power for comparison between two proportions
Calculate sample size for non-inferiority trial of two proportions
Calculate sample size from standard deviation and confidence interval
Calculate sample size or power for comparison between two means
Calculate sample size or power for comparison between two paired means
Calculate sample size or power for comparison between two survival curves

For drawing graphs

Bar graph(Frequencies)
Pie chart(Frequencies)
Stem-and-leaf display
QQ plot
Bar graph(Means)
Line graph(Means)
Line graph(Repeated measures)
Dot chart
Ordered chart
Scatterplot matrix
Adjusted survival curve
Stacked cumulative incidences

Statistical functions from original R commander

Principal-components analysis
Factor analysis
k-means cluster analysis
Hierarchical cluster analysis
Summarize hierarchical clustering
Add hierarchical clustering to data set
Linear hypothesis
Variance-inflation factor
Breusch-Pagan test for heteroscedasticity
Durbin-Watson test for autocorrelation
RESET test for nonlinearity
Bonferroni outlier test
Basic diagnostic plots
Residual quantile-comparison plot
Component+residual plots
Added-variable plots
Influence plot
Effect plots

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EZR menu

Summary of analysis

Survival analysis

Kaplan-Meier plot

ROC analysis